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Principal Investigator: CAROLINE E BURNS
Organization: BOSTON CHILDREN'S HOSPITAL
Fiscal Year: 2024
Award: $621,233
Funding agency: National Heart Lung and Blood Institute
PROJECT SUMMARY:
Hemizygous microdeletions encompassing TBX1 cause 22q11.2 deletion syndrome (22q11.2DS), the most
common deletion syndrome in humans. Among a broad spectrum of clinical features that often include
craniofacial dysmorphia, congenital heart defects (CHDs) of the outflow tract (OFT), and aortic arch, which is
derived from embryonic vessels termed pharyngeal arch arteries (PAAs), are the main causes of mortality
during childhood. Importantly, specific craniofacial muscles, the OFT, and PAAs all derive from the pharyngeal
apparatus, a transient series of arches and pouches that form by segmentation on the lateral surface of the
head. Because segmentation is severely compromised in Tbx1-deficient animals, their craniofacial and
cardiovascular defects were considered secondary. Using zebrafish as a model, my laboratory reported that
tbx1 mutant embryos recapitulate several aspects of 22q11.2DS, including craniofacial muscle, OFT, and PAA
deficiencies. We also demonstrated that these end structures descend from nkx2.5+ progenitors initially
specified in the anterior lateral plate mesoderm (ALPM) before becoming sequestered in the cores of the
pharyngeal arches. Unexpectedly, we discovered that tbx1 mutants fail to specify the nkx2.5+ pharyngeal
lineage in the ALPM that gives rise to the missing derivatives. Because this phenotype precedes pharyngeal
segmentation, defects in progenitor specification are likely causal for the deficiencies observed in tbx1
mutants. The aberrant fates of these progenitors, which maintain hand2 and gata5 expression in the ALPM,
are unknown. Moreover, the molecular mechanisms by which Tbx1 directs specification of the pharyngeal
lineage in the ALPM have not been elucidated in any model system. Here, we have the unique opportunity to
uncover the molecular mechanisms by which Tbx1 directs specification of the pharyngeal progenitor cell
lineage because we have defined the relevant developmental time window for analysis, identified markers of
the preserved (gata5+) and missing (nkx2.5+) progenitor populations, implemented single-cell RNA and ATAC
sequencing that allows for unprecedented resolution of changes in cellular populations and chromatin
accessibility, and generated state-of-the-art genetic tools for tracking the aberrant fates of tbx1-expressing
cells in tbx1 mutants and for identifying Tbx1 target loci that confer the pharyngeal progenitor cell fate. Overall,
we propose to use the attributes of the zebrafish system, including its genetic tractability, unmatched
embryonic accessibility, and imaging capabilities, to reveal new mechanistic insights that will provide the most
comprehensive view of how Tbx1 is necessary and potentially sufficient for instructing the pharyngeal
progenitor cell lineage during vertebrate development.
Terms: <0-11 years old><22q11><22q11 Chromosomal Microdeletion Syndrome><22q11 Deletion Syndrome><22q11.2 deletion syndrome><22q11.2DS><22q11DS><ATAC sequencing><ATAC-seq><ATACseq><ATRA><Active Follow-up><Address><Animal Model><Animal Models and Related Studies><Animals><Anterior><Arteries><Assay for Transposase-Accessible Chromatin using sequencing><Autosomal dominant Opitz G/BBB syndrome><Basal Transcription Factor><Basal transcription factor genes><Biologic Models><Biological Models><Brachydanio rerio><Branchial arch structure><CUT&RUN><Cardiac><Cardiac Muscle Cells><Cardiac Myocytes><Cardiocyte><Cardiovascular><Cardiovascular Body System><Cardiovascular Organ System><Cardiovascular system><Cayler cardiofacial syndrome><Cell Body><Cell Lineage><Cell Nucleus><Cells><Cephalic><Child><Child Youth><Childhood><Children (0-21)><Chromatin><Chromosomal microdeletion><Chromosome 22q11.2 deletion syndrome><Cleavage Targets and Release Using Nuclease><Cleavage Under Targets and Release Using Nuclease><Clinical><Congenital Cardiac Defects><Congenital Heart Defects><Cranial><Danio rerio><Data Set><Defect><Development><Di George syndrome><DiGeorge Syndrome><DiGeorge anomaly><DiGeorge sequence><Dissection><Embryo><Embryonic><Epistasis><Epistatic Deviation><Expression Signature><Gene Expression><Gene Expression Profile><General Transcription Factor Gene><General Transcription Factors><Genes><Genetic><Genetic Epistasis><Geography><Guide RNA><Head><Heart Muscle Cells><Heart Vascular><Heart myocyte><Heterogeneity><Human><In Situ Hybridization><Interaction Deviation><Knock-in><Laboratories><Lateral><Learning><Link><Maps><Mesoderm><Model System><Modeling><Modern Man><Molecular><Muscle><Muscle Tissue><Nucleus><Patients><Pattern><Pharangeal Arch><Pharyngeal Apparatus><Pharyngeal structure><Pharynx><Phenotype><Population><Progenitor Cells><Reporter><Reporting><Resolution><Retinoic Acid><Sedlackova syndrome><Series><Shprintzen syndrome><Somites><Specific qualifier value><Specified><Structure><Surface><Syndrome><System><Testing><Throat><Time><Trans Vitamin A Acid><Transcription Factor Proto-Oncogene><Transcription factor genes><Tretinoin><Tretinoinum><Undifferentiated><Visceral Arches><Vitamin A Acid><Zebra Danio><Zebra Fish><Zebrafish><active followup><all-trans-Retinoic Acid><all-trans-Vitamin A acid><aortic arch><assay for transposase accessible chromatin followed by sequencing><assay for transposase accessible chromatin seq><assay for transposase accessible chromatin sequencing><assay for transposase-accessible chromatin with sequencing><biomarker identification><branchial arch><cardiomyocyte><circulatory system><conotruncal anomaly face syndrome><craniofacial><craniofacies><developmental><differential expression><differentially expressed><epistatic relationship><experiment><experimental research><experimental study><experiments><familial third and fourth pharyngeal pouch syndrome><follow up><follow-up><followed up><followup><gRNA><gene expression pattern><gene expression signature><gene x gene interaction><genetic epistases><genetic strain><identification of biomarkers><identification of new biomarkers><imaging capabilities><in situ Hybridization Genetics><in situ Hybridization Staining Method><insight><kids><knockin><marker identification><microdeletion><model of animal><model organism><mortality><multiomics><multiple omics><muscular><mutant><panomics><pediatric><pharyngeal arch><pharyngeal pouch syndrome><preservation><progenitor><progenitor cell fate><progenitor cell fate specification><progenitor cell population><progenitor fate><progenitor fate specification><progenitor population><progenitor specification><resolutions><scRNA-seq><single cell RNA-seq><single cell RNAseq><single cell expression profiling><single cell transcriptomic profiling><single-cell RNA sequencing><small molecule><stem and progenitor cell fate><stem and progenitor cell population><stem cell fate><stem cell fate specification><stem cell population><stem cell specification><stem cells><third and fourth pharyngeal pouch syndrome><thymic and parathyroid agenesis syndrome><tool><trans-Retinoic Acid><transcription factor><transcriptional differences><transcriptional profile><transcriptional signature><transcriptomics><velo-cardio-facial syndrome><velocardiofacial syndrome><velofacial hypoplasia><youngster>