Epigenomics and DNA Sequencing
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Principal Investigator: PAUL A WADE Organization: NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES Fiscal Year: 2022 Award: $3,185,628 Funding agency: National Institute of Environmental Health Sciences The Epigenomics and DNA Sequencing Core Lab provides a variety of services to the NIEHS scientific community. For next-generation sequencing, the core produces hundreds of millions of short sequence reads of individual DNA molecules using the Illumina NovaSeq 6000, NextSeq 500 or Illumina's MiSeq platforms. The Core also performs high-throughput single cell sequencing on the 10X Genomics Chromium or for smaller scale single cell analysis using the Illumina/BioRad ddSeq instrumentation. The Core staff provides, instruction on NGS theory, consultation in experimental design, training of staff in various methods, expert advice in cost saving practices as well as expert advice on data interpretation and analysis of data. NIEHS scientists may request NextGen Sequencing by submitting project applications online. The applications will be reviewed by the core staff and/or the governance committee. The core will accept and process samples from the approved projects for sequencing. The Epigenomics and DNA Sequencing Core Lab was involved in several COVID-19 related projects which were funded by Institute funds. Here is a list of those projects and their Principal Investigator: Dr. Darryl Zeldin -SARS-CoV-2 and sEH Inhibition Dr. Douglas Bell- Hyper-plexed sample barcoded screening for SARS-CoV-2 by NGS (multiple projects) Dr. Xioaling Li- IP6K inhibitors and coronavirus infection Dr. Robin Stanley- Characterizing the effect of CoVid19 Nsp15 expression on human cells Dr. Stavros Garantziotis- Hyaluronan treatment in COVID19 Terms: <2019 novel corona virus><2019 novel coronavirus><2019-nCoV><ATAC-seq><ATACseq><Bar Codes><COVID-19><COVID-19 affected><COVID-19 consequence><COVID-19 effect><COVID-19 impact><COVID-19 impacted><COVID-19 screening><COVID-19 virus><COVID19><COVID19 screening><COVID19 virus><CV-19><CV19><Cell Body><Cell Isolation><Cell Segregation><Cell Separation><Cell Separation Technology><Cells><ChIP Sequencing><ChIP-seq><Chromium><CoV-2><CoV2><Communities><Consultations><Coronaviridae Infections><Coronavirus Infections><Cost Savings><Cr element><Custom><DNA><DNA Sequencing Facility><DNA seq><DNA sequencing><DNAseq><Data Analyses><Data Analysis><Deoxyribonucleic Acid><Disease><Disorder><Experimental Designs><Funding><Genetic><Genomics><Human><Hyaluronan><Individual><Institutes><Instruction><Investigation><Investigators><Libraries><Methods><Modern Man><NGS Method><NGS system><NIEHS><National Institute of Environmental Health Sciences><Outcome><Preparation><Principal Investigator><Process><RNA Seq><RNA sequencing><RNAseq><Research><Research Personnel><Researchers><Robin><Robin bird><SARS corona virus 2><SARS-CO-V2><SARS-COVID-2><SARS-CoV-2><SARS-CoV-2 screening><SARS-CoV2><SARS-associated corona virus 2><SARS-associated coronavirus 2><SARS-coronavirus-2><SARS-related corona virus 2><SARS-related coronavirus 2><SARSCoV2><Sampling><Scientist><Sequencing Core><Services><Severe Acute Respiratory Coronavirus 2><Severe Acute Respiratory Distress Syndrome CoV 2><Severe Acute Respiratory Distress Syndrome Corona Virus 2><Severe Acute Respiratory Distress Syndrome Coronavirus 2><Severe Acute Respiratory Syndrome CoV 2><Severe Acute Respiratory Syndrome-associated coronavirus 2><Severe Acute Respiratory Syndrome-related coronavirus 2><Severe acute respiratory syndrome associated corona virus 2><Severe acute respiratory syndrome corona virus 2><Severe acute respiratory syndrome coronavirus 2><Severe acute respiratory syndrome related corona virus 2><System><Training><Wuhan coronavirus><barcode><cell sorting><chromatin immunoprecipitation-sequencing><corona virus disease 2019><coronavirus disease 2019><coronavirus disease 2019 consequence><coronavirus disease 2019 effect><coronavirus disease 2019 impact><coronavirus disease 2019 screening><coronavirus disease 2019 virus><coronavirus disease-19><coronavirus disease-19 impact><coronavirus disease-19 virus><coronavirus infectious disease-19><data interpretation><epigenomics><hCoV19><inhibitor><instrumentation><nCoV2><next gen sequencing><next generation sequencing><nextgen sequencing><scRNA-seq><severe acute respiratory syndrome coronavirus 2 screening><single cell RNA-seq><single cell RNAseq><single cell analysis><single cell expression profiling><single cell sequencing><single cell transcriptomic profiling><single-cell RNA sequencing><targeted sequencing><theories><transcriptome sequencing>