SARS-CoV-2 infection of non-human primates

NIH Pandemic-Era Grants

Pandemic Era Grants

2024

Document text

Principal Investigator: Daniel  Barber
Organization: NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES
Fiscal Year: 2024
Award: $397,520
Funding agency: National Institute of Allergy and Infectious Diseases

SARS-CoV-2 infection has a spectrum of clinical disease outcomes, ranging from asymptomatic to fatal. The severity of COVID-19 is largely determined by the degree of virus-induced damage and immune-mediated pathology. However, the factors that prevent or promote pulmonary inflammation during SARS-CoV-2 infection are not well understood. Rhesus macaques experimentally infected with SARS-CoV-2 develop mild signs of disease and clear most of the virus within a couple weeks. Accordingly, this species is a useful model for examining the mechanisms of effective viral control and well-controlled inflammatory response that occurs in most individuals with SARS-CoV-2 infection. Here we use rhesus macaques to examine the roles of prototypic pro- and anti-inflammatory cytokines IFNγ and IL-10, respectively, in host resistance to SARS-CoV-2 infection and the development of COVID-19 disease.

Type I and III interferons have a demonstrated role in control of SARS-CoV-2 infection. The contribution of type II IFN, IFNγ, to protection or pathology during COVID-19 is less well understood. IFNγ and molecules induced by IFNγR signaling (e.g., CXCL10) have been associated with severe COVID-19 and the development of acute respiratory distress syndrome. Elevated levels of IFNγ also strongly correlate with the development of multi-system inflammatory syndrome in children after SARS-CoV-2 infection. In ACE2 transgenic mice, neutralizing IFNγ along with TNF reduced mortality of severe SARS-CoV-2 infection. However, IFNγ may also contribute to host-protection. IFNγ has been shown to inhibit SARS-CoV-2 replication in vitro. Administration of IFNγ to immunocompromised individuals with severe COVID-19 resulted in rapid declines in SARS-CoV-2 viral loads. In the mouse model, IFNγ is required for non-specific protection against SARS-CoV-2 observed after intravenous inoculation with the tuberculosis vaccine Bacillus Calmette–Guérin (BCG). Thus, IFNγ could contribute to protection or lung pathology during SARS-CoV-2 infection depending on the context.

Negative immune regulation also likely also has a key role in determining the outcome of coronavirus infection. In mice, the anti-inflammatory cytokine IL-10 has a protective role in coronavirus induced encephalitis. In humans with SARS-CoV-2 infection IL-10 has been associated with severe COVID-19 in multiple studies. IL-10 is upregulated early in disease progression, and along with IL-6, is a predictive biomarker for poor COVID-19 outcomes. However, a study in children reported that higher plasma IL-10 levels were correlated with decreased viral measurements in nasal aspirates. The mechanistic role of IL-10 and IFNγ in the rhesus macaque model of mild SARS-CoV-2 infection has yet to be determined.

In this rhesus macaque model of mild SARS-CoV-2 infection, we find that IL-10 and IFNγ have opposing effects on the development of lung lesions quantified with 18FDG-PET/CT imaging without an appreciable effect on SARS-CoV-2 replication. We identify a key role for IL-10 in negatively regulating the clonal expansion of virus-specific CD4 and CD8 T cells. Unexpectedly, we also find that IL-10 drives the differentiation of newly recruited airway effector CD4 and CD8 T cells into tissue resident memory T cells (Trm) after resolution of the infection and has a role in maintaining Trm in the nasal mucosa.

Terms: <(TNF)-α><0-11 years old><18-FDG><18F- FDG><18FDG><2 Fluoro 2 deoxy D glucose><2-Fluoro-2-deoxyglucose><2019 novel corona virus><2019 novel coronavirus><2019-nCoV><ACE2><ARDS><AVP, Type II><Acute Respiratory Distress><Acute Respiratory Distress Syndrome><Adult ARDS><Adult RDS><Adult Respiratory Distress Syndrome><Anti-Inflammatories><Anti-Inflammatory Agents><Anti-inflammatory><Anti-viral Response><Antiviral Protein, Type II><B cell differentiation factor><B cell stimulating factor 2><B-Cell Differentiation Factor><B-Cell Differentiation Factor-2><B-Cell Stimulatory Factor-2><BCDF><BCG Live><BSF-2><BSF2><Bacille Calmette-Guérin><Bacillus Calmette Guérin><Blood Plasma><Brain Inflammation><CAT scan><CD119><CD119 Antigen><CD8 Cell><CD8 T cells><CD8 lymphocyte><CD8+ T cell><CD8+ T-Lymphocyte><CD8-Positive Lymphocytes><CD8-Positive T-Lymphocytes><CDw119 antigen><COVID disease severity><COVID severity><COVID-19><COVID-19 disease severity><COVID-19 infection><COVID-19 severity><COVID-19 virus><COVID-19 virus infection><COVID19 disease severity><COVID19 infection><COVID19 severity><COVID19 virus><CRG-2><CSIF><CSIF-10><CT X Ray><CT Xray><CT imaging><CT scan><CV-19><CXCL10><CXCL10 gene><Cachectin><Cell Communication and Signaling><Cell Signaling><Child><Child Youth><Children (0-21)><Clinical><Clonal Expansion><CoV-2><CoV2><Computed Tomography><Coronaviridae><Coronaviridae Infections><Coronavirus><Coronavirus Infections><Coronavirus Infectious Disease 2019><Cytokine Synthesis Inhibitory Factor><Da Nang Lung><Development><Disease><Disease Outcome><Disease Progression><Disorder><Encephalitis><Experimental Models><Flow Cytofluorometries><Flow Cytofluorometry><Flow Cytometry><Flow Microfluorimetry><Flow Microfluorometry><Goals><HPGF><Hepatocyte-Stimulating Factor><Host resistance><Human><Hybridoma Growth Factor><IFI10><IFN><IFN-Gamma><IFN-beta 2><IFN-g><IFN-gamma receptor 1><IFN-gammaR><IFN-γ><IFN-γR><IFNB2><IFNG><IFNGR><IFNGR1><IFNGR1 gene><IFNγ><IL-10><IL-6><IL10><IL10A><IL6 Protein><INP10><IP-10><Immune><Immune Interferon><Immune response><Immune system><Immunes><Immunocompromised><Immunocompromised Host><Immunocompromised Patient><Immunological response><Immunomodulation><Immunosuppressed Host><In Vitro><Individual><Infection><Infection Control><Inflammatory Response><Interferon Gamma><Interferon Gamma Receptor-1><Interferon Type II><Interferon-Gamma Receptor 1><Interferons><Interleukin 10 Precursor><Interleukin-10><Interleukin-6><Intracellular Communication and Signaling><Intravenous><Lung Diseases><Lung Inflammation><M mulatta><M. mulatta><MGI-2><MIS-C><MOB-1><MTB vaccine><Macaca><Macaca mulatta><Macaque><Macrophage-Derived TNF><Measurement><Mediating><Mice><Mice Mammals><Modeling><Modern Man><Monocyte-Derived TNF><Multiorgan Inflammatory Syndrome in Children><Multisystem Inflammatory Syndrome in Children><Murine><Mus><Myeloid Differentiation-Inducing Protein><Nasal><Nasal Mucosa><Nasal Passages Nose><Nose><Outcome><PET/CT><PET/CT scan><Pathology><Plasma><Plasma Serum><Plasmacytoma Growth Factor><Pneumonitis><Pulmonary Diseases><Pulmonary Disorder><Pulmonary Inflammation><Pulmonary Pathology><Receptor Protein><Regulation><Reporting><Resolution><Respiratory System, Nose, Nasal Passages><Reticuloendothelial System, Serum, Plasma><Rhesus Macaque><Rhesus Monkey><Role><SARS corona virus 2><SARS-CO-V2><SARS-COVID-2><SARS-CoV-2><SARS-CoV-2 disease severity><SARS-CoV-2 infection><SARS-CoV-2 inhibitor><SARS-CoV-2 severity><SARS-CoV2><SARS-CoV2 infection><SARS-associated corona virus 2><SARS-associated coronavirus 2><SARS-coronavirus-2><SARS-related corona virus 2><SARS-related coronavirus 2><SARSCoV2><SCYB10><Severe Acute Respiratory Coronavirus 2><Severe Acute Respiratory Distress Syndrome CoV 2><Severe Acute Respiratory Distress Syndrome Corona Virus 2><Severe Acute Respiratory Distress Syndrome Coronavirus 2><Severe Acute Respiratory Syndrome CoV 2><Severe Acute Respiratory Syndrome-associated coronavirus 2><Severe Acute Respiratory Syndrome-related coronavirus 2><Severe acute respiratory syndrome associated corona virus 2><Severe acute respiratory syndrome coronavirus 2><Severe acute respiratory syndrome coronavirus 2 infection><Severe acute respiratory syndrome coronavirus 2 inhibitor><Severe acute respiratory syndrome related corona virus 2><Shock Lung><Signal Transduction><Signal Transduction Systems><Signaling><Stiff lung><Structure of mucous membrane of nose><T-Cell Subsets><T-Lymphocyte Subsets><T8 Cells><T8 Lymphocytes><TB vaccine><TNF><TNF A><TNF Alpha><TNF gene><TNF-α><TNFA><TNFα><Tomodensitometry><Transgenic Mice><Tuberculosis Vaccines><Tumor Necrosis Factor><Tumor Necrosis Factor-alpha><Vaccine for TB><Vaccine for Tuberculosis><Viral><Viral Burden><Viral Load><Viral Load result><Virus><Wuhan coronavirus><X-Ray CAT Scan><X-Ray Computed Tomography><X-Ray Computerized Tomography><Xray CAT scan><Xray Computed Tomography><Xray computerized tomography><after COVID-19 infection><after SARS-CoV-2 infection><after SARS-CoV2 infection><after infection by SARS-CoV-2><after severe acute respiratory distress syndrome CoV-2 infection><angiotensin converting enzyme 2><angiotensin converting enzyme II><anti-TB vaccine><aspirate><biological signal transduction><block SARS-CoV-2><block severe acute respiratory syndrome coronavirus 2><catscan><cell imaging><cellular imaging><computed axial tomography><computer tomography><computerized axial tomography><computerized tomography><confocal imaging><corona virus><coronavirus disease 2019><coronavirus disease 2019 disease severity><coronavirus disease 2019 infection><coronavirus disease 2019 severity><coronavirus disease 2019 virus><coronavirus disease severity><coronavirus disease-19><coronavirus disease-19 virus><coronavirus infectious disease-19><cytokine><developmental><disease of the lung><disorder of the lung><experiment><experimental research><experimental study><experiments><flow cytophotometry><fluorodeoxyglucose><following COVID-19 infection><following SARS-CoV-2 infection><following SARS-CoV2 infection><following infection by SARS-CoV-2><following severe acute respiratory distress syndrome CoV-2 infection><gIP-10><hCoV19><host response><immune modulation><immune regulation><immune system response><immunologic reactivity control><immunomodulatory><immunoregulation><immunoregulatory><immunoresponse><immunosuppressed patient><infected with COVID-19><infected with COVID19><infected with SARS-CoV-2><infected with SARS-CoV2><infected with coronavirus disease 2019><infected with severe acute respiratory syndrome coronavirus 2><inhibit SARS-CoV-2><inhibit severe acute respiratory syndrome coronavirus 2><interest><interferon beta 2><interferon gamma receptor><kids><lFN-Gamma><life-threatening COVID><life-threatening COVID-19><life-threatening SARS-CoV-2><life-threatening coronavirus disease><life-threatening coronavirus disease 2019><life-threatening severe acute respiratory syndrome coronavirus 2><lung development><lung disorder><lung lesion><lung pathology><mortality><mouse model><multisystem inflammatory syndrome of children><murine model><nCoV2><non-contrast CT><non-human primate><noncontrast CT><noncontrast computed tomography><nonhuman primate><pediatric inflammatory multisystem syndrome><positron emission computed tomography><post SARS-CoV-2 infection><predictive biomarkers><predictive marker><predictive molecular biomarker><prevent><preventing><previous COVID-19 infection><previous SARS-CoV-2 infection><previous SARS-CoV2 infection><previous severe acute respiratory distress syndrome CoV-2 infection><prior COVID-19 infection><prior SARS-CoV-2 infection><prior SARS-CoV2 infection><prior severe acute respiratory distress syndrome CoV-2 infection><prototype><pulmonary lesion><receptor><recruit><resident memory T cell><resolutions><serious COVID><serious COVID-19><serious SARS-CoV-2><serious coronavirus disease><serious coronavirus disease 2019><serious severe acute respiratory syndrome coronavirus 2><severe COVID><severe COVID-19><severe COVID19><severe SARS-CoV-2><severe acute respiratory syndrome coronavirus 2 disease severity><severe acute respiratory syndrome coronavirus 2 severity><severe coronavirus disease><severe coronavirus disease 19><severe coronavirus disease 2019><severe severe acute respiratory syndrome coronavirus 2><social role><tissue resident memory T cell><vaccine against M. tuberculosis><vaccine against Mtb><vaccine against Mycobacterium tuberculosis><vaccine against TB><vaccine against tuberculosis><vaccine candidates against tuberculosis><wet lung><youngster>