Development of an Automated Diagnostic Platform for SARS-CoV-2 Monitoring in Vulnerable Areas

NIH Pandemic-Era Grants

Pandemic Era Grants

2021

Document text

Principal Investigator: Diana Carolina Vanegas-Gamboa
Organization: CLEMSON UNIVERSITY
Fiscal Year: 2021
Award: $471,237
Funding agency: National Institute on Alcohol Abuse and Alcoholism

Project Summary
The devastation caused by emerging pathogens with fast transmission capacity, such as SARS-CoV-2, has
demonstrated the importance of preparedness for future viral outbreaks; this includes the ability for fast
deployment of in-situ testing tools and epidemiological surveillance with high temporal and spatial
resolution; particularly in places that are most vulnerable to becoming reservoirs of infectious agents.
We propose to develop a versatile multiplexing detection platform for SARS-CoV-2 in saliva. The proposed
system will integrate signals from different biorecognition elements. Aptamer, antibody, and ACE2 will be
immobilized onto laser inscribed graphene electrodes, and detection mechanisms targeting SARS-CoV-2
spike protein will be studied under varying testing conditions (pH, temperature, ionic strength). After
determining the operating conditions for enhanced performance of each biosensor, a self-referencing
approach will be used between complementary recognition elements (i.e., possible combinations of
aptamers, antibodies, and ACE2 enzyme biosensors) to evaluate the effects on test results accuracy (i.e.,
risk of false-positive and false-negative results). A saliva pre-treatment protocol will be developed to
facilitate SARS-CoV-2 testing in human saliva using the multiplex biosensor platform. An open channel
microfluidics system will be designed to automatically split and channel a single saliva sample into multiple
streams to the biosensors without saturation, biofouling, and pump requirement. The development of a
functional and reliable multiplex biosensor system will be useful for addressing longstanding needs in public
health as the respiratory Coronavirus family continues its seasonal visits, which may repeat over several
decades, much like the occasional visits from the influenza virus, with varying degrees of virulence.

Terms: <2019 novel corona virus><2019 novel coronavirus><2019-nCoV><2019-nCoV S protein><2019-nCoV spike glycoprotein><2019-nCoV spike protein><ACE2><Address><Antibodies><Area><Behavior><Biosensing Technics><Biosensing Techniques><Biosensor><COVID-19 S protein><COVID-19 detection><COVID-19 monitoring><COVID-19 spike glycoprotein><COVID-19 spike protein><COVID-19 testing><COVID-19 virus><COVID19  detection><COVID19 S protein><COVID19 monitoring><COVID19 spike glycoprotein><COVID19 spike protein><COVID19 testing><COVID19 virus><Cell Communication and Signaling><Cell Signaling><CoV-2><CoV2><Coronaviridae><Coronavirus><Coupled><DNA Molecular Biology><Detection><Development><Device Designs><Disease Outbreaks><Educational workshop><Electrodes><Elements><Enzyme Gene><Enzymes><Epidemiologic Monitoring><Epidemiologic surveillance><Epidemiological Monitoring><Epidemiological surveillance><Epidemiology Surveillance><Experimental Designs><Family><Florida><Future><Goals><Human><Human Resources><Immobilization><In Situ><Individual><Infectious Agent><Influenza Virus><Intracellular Communication and Signaling><Investigators><Ionic Strengths><Iowa><Label><Laboratories><Laser Electromagnetic><Laser Radiation><Lasers><Lead><Leadership><Liquid substance><Logistics><Manpower><Microfluidics><Modeling><Modern Man><Molecular Biology><Outbreaks><Pb element><Performance><Preparedness><Printing><Protocol><Protocols documentation><Public Health><Pump><Readiness><Research><Research Personnel><Researchers><Resolution><Risk><Role><SARS corona virus 2><SARS-CoV-2><SARS-CoV-2 S protein><SARS-CoV-2 detection><SARS-CoV-2 monitoring><SARS-CoV-2 spike glycoprotein><SARS-CoV-2 spike protein><SARS-CoV-2 testing><SARS-CoV2><SARS-CoV2 S protein><SARS-CoV2 spike glycoprotein><SARS-CoV2 spike protein><SARS-associated corona virus 2><SARS-associated coronavirus 2><SARS-coronavirus-2><SARS-related corona virus 2><SARS-related coronavirus 2><SARSCoV2><Saliva><Sampling><Severe Acute Respiratory Distress Syndrome CoV 2><Severe Acute Respiratory Distress Syndrome Corona Virus 2><Severe Acute Respiratory Distress Syndrome Coronavirus 2><Severe Acute Respiratory Syndrome CoV 2><Severe Acute Respiratory Syndrome-associated coronavirus 2><Severe Acute Respiratory Syndrome-related coronavirus 2><Severe acute respiratory syndrome associated corona virus 2><Severe acute respiratory syndrome corona virus 2><Severe acute respiratory syndrome coronavirus 2><Severe acute respiratory syndrome coronavirus 2 S protein><Severe acute respiratory syndrome coronavirus 2 spike glycoprotein><Severe acute respiratory syndrome coronavirus 2 spike protein><Severe acute respiratory syndrome related corona virus 2><Signal Transduction><Signal Transduction Systems><Signaling><Stream><Students><System><Temperature><Test Result><Testing><Transmission><Treatment Protocols><Treatment Regimen><Treatment Schedule><Universities><Validation><Viral><Virulence><Visit><Work><Workshop><Wuhan coronavirus><angiotensin converting enzyme 2><angiotensin converting enzyme II><antibody based detection><antibody detection><aptamer><base><biological sensor><biological signal transduction><biosensing><computer program><computer programming><computer science><conditioning><conference><convention><corona virus><coronavirus disease 2019 S protein><coronavirus disease 2019 detection><coronavirus disease 2019 monitoring><coronavirus disease 2019 spike glycoprotein><coronavirus disease 2019 spike protein><coronavirus disease 2019 testing><coronavirus disease 2019 virus><cyber physical><cyberphysical><design><designing><detect COVID-19><detect COVID19><detect SARS-CoV-2><detect antibodies><detect severe acute respiratory syndrome coronavirus 2><detection platform><detection system><developmental><diagnostic platform><diagnostic system><emerging pathogen><experiment><experimental research><experimental study><fluid><graphene><hCoV19><heavy metal Pb><heavy metal lead><infectious organism><influenzavirus><liquid><meetings><multiplex detection><mutant><nCoV2><new pathogen><novel pathogen><orthopedic freezing><personnel><prototype><rapid detection><respiratory><saliva sample><salivary sample><seal><severe acute respiratory syndrome coronavirus 2 detection><severe acute respiratory syndrome coronavirus 2 monitoring><severe acute respiratory syndrome coronavirus 2 testing><social role><summit><symposia><symposium><temporal measurement><temporal resolution><time measurement><tool><transmission process><µfluidic>